My Personal Therapeutics, a London-based medtech/digital therapeutics company and Pentavere Research Group, a Canadian-based Artificial Intelligence and data insight company have been awarded Eurkela Collaborative R&D funding for artificial intelligence and quantum technologies. The funding is for a project titled: Utilisation of AI to develop Personalised Treatment Plans for cancer.
Funding totalling £792,000 (Euro 870,000) is co-funded by the UK’s innovation agency, Innovate UK, and Canada’s National Research Council’s Industrial Research Assistant Program, as part of their collaborate R&D programme.
These funds will be used by Pentavere Research Group and My Personal Therapeutics to access Genomics England’s whole genome sequencing lung cancer data set and selectively generate drosophila avatars for high-throughput drug screening. The resulting tumour genomic profile and corresponding drug treatment recommendation data will feed into their AI Personal Discovery Process (PDP) predictive model.
Laura Towart, CEO, My Personal Therapeutics, commented: “This Eureka award will partly fund this ground-breaking collaboration between My Personal Therapeutics, Pentavere and Genomics England towards the development of our rapid personalised cancer therapeutics offering – AI PDP.”
The PDP technology leverages Big Data curated from electronic health records, and genomics to build personalised fruit fly ‘avatars’ that model individual patients at an unprecedented level of complexity. Using robotics, thousands of drugs are screened in combinations to identify drug cocktails designed to target the tumour while preserving the patient’s quality of life. Nearly all combinations incorporate non-cancer drugs, making them less toxic and more affordable. The company says they are integrating AI predictive modelling to enable rapid personalised treatment recommendations.
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A small study published 8 April 2020 in Science by researchers in China found that cats are highly susceptible to SARS-CoV-2 and can pass the virus on to other cats via airborne transmission. However, dogs showed low susceptibility, and livestock including pigs, chickens, and ducks were not susceptible to the virus.
They did not study specifically whether cats can pass the virus to humans, although this seems likely as cats can pass the virus to other cats via airborne transmission.
From their findings, the researchers suggest that surveillance for SARS-CoV-2 in cats should be considered as an adjunct to elimination of COVID-19 in humans.>/p>
Two viruses – SARS-CoV 2/F13/environment/2020/Wuhan, isolated from an environmental sample collected in the Huanan Seafood Market in Wuhan (F13-E), and SARS-CoV-2/CTan/human/2020/Wuhan (CTan-H), isolated from a human patient – were used in the study.
The researchers first investigated the replication of SARS-CoV-2 in cats. Seven subadult cats (aged 6-9 months) were intranasally inoculated with 105 PFU of CTan-H. Two animals were scheduled to be euthanized on days 3 post infection (p.i.) and 6 p.i., respectively, to evaluate viral replication in their organs. Three subadult cats were placed in separate cages within an isolator. To monitor respiratory droplet transmission, an uninfected cat was placed in a cage adjacent to each of the infected cats.
In the transmission study, viral RNA was detected in the faeces of two virus-inoculated subadult cats on day 3 p.i., and in all three virus-inoculated subadult cats on day 5 p.i. Viral RNA was detected in the faeces of one exposed cat on day 3 p.i. The pair of subadult cats with viral RNA-positive faeces were euthanized on day 11 p.i., and viral RNA was detected in the soft palate and tonsils of the virus-inoculated animal and in the nasal turbinate, soft palate, tonsils, and trachea of the exposed animal indicating that respiratory droplet transmission had occurred in this pair of cats. Antibodies against SARS-CoV-2 were detected in all three virus-inoculated subadult cats and one exposed cat.
They replicated the study in juvenile cats and found “massive lesions in the nasal and tracheal mucosa epitheliums, and lungs”, indicating that SARS-CoV-2 can replicate efficiently in cats, with younger cats being more permissive.
Additionally, and importantly, the study showed that the virus can transmit between cats via the airborne route.
For the study in dogs, five 3-month-old beagles were intranasally inoculated with 105 PFU of CTan-H, and housed with two uninoculated beagles in a room. Oropharyngeal and rectal swabs from each beagle were collected over a series of days.
Viral RNA was detected in the rectal swabs of two virus-inoculated dogs on day 2 p.i and in the rectal swab of one dog on day 6 p.i. However, they note that “infectious virus was not detected in any swabs collected from these dogs”.
Two virus-inoculated dogs showed antibodies. The other two virus-inoculated dogs and the two contact dogs were all seronegative for SARS-CoV-2.
The dog study was repeated in pigs, chickens and ducks and viral RNA was not detected in any swabs collected from these animals or from naïve contact animals. All were seronegative for SARS-CoV-2. doi: 10.1126/science.abb7015
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An emerging species of C. difficile, named clade A, was found to make up approximately 70 per cent of the samples taken from hospital patients Scientists have discovered that the gut-infecting bacterium C. difficile is evolving into two separate species, with one group highly adapted to spread in hospitals. Researchers at the Wellcome Sanger Institute, London School of Hygiene & Tropical Medicine and collaborators identified genetic changes in the newly-emerging species that allow it to thrive on the Western sugar-rich diet, evade common hospital disinfectants and spread easily. Able to cause debilitating diarrhea, they estimated this emerging species started to appear thousands of years ago, and accounts for over two thirds of healthcare C. difficile infections. The largest ever genomic study of C. difficile shows how bacteria can evolve into a new species, and demonstrates that C. difficile is continuing to evolve in response to human behaviour. The results could help inform patient diet and infection control in hospitals. C. difficile bacteria can infect the gut and are the leading cause of antibiotic-associated diarrhea worldwide. While someone is healthy and not taking antibiotics, millions of ‘good’ bacteria in the gut keep the C. difficile under control. However, antibiotics wipe out the normal gut bacteria, leaving the patient vulnerable to C. difficile infection in the gut. This is then difficult to treat and can cause bowel inflammation and severe diarrhea. Often found in hospital environments, C. difficile forms resistant spores that allow it to remain on surfaces and spread easily between people, making it a significant burden on the healthcare system. To understand how this bacterium is evolving, researchers collected and cultured 906 strains of C. difficile isolated from humans, animals, such as dogs, pigs and horses, and the environment. By sequencing the DNA of each strain, and comparing and analysing all the genomes, the researchers discovered that C. difficile is currently evolving into two separate species. “Our large-scale genetic analysis allowed us to discover that C. difficile is currently forming a new species with one group specialized to spread in hospital environments. This emerging species has existed for thousands of years, but this is the first time anyone has studied C. difficile genomes in this way to identify it. This particular bacteria was primed to take advantage of modern healthcare practices and human diets, before hospitals even existed” said Dr Nitin Kumar, joint first author from the Wellcome Sanger Institute. The researchers found that this emerging species, named C. difficile clade A, made up approximately 70 per cent of the samples from hospital patients. It had changes in genes that metabolize simple sugars, so the researchers then studied C. difficile in mice, and found that the newly emerging strains colonized mice better when their diet was enriched with sugar. It had also evolved differences in the genes involved in forming spores, giving much greater resistance to common hospital disinfectants. These changes allow it to spread more easily in healthcare environments. Dating analysis revealed that while C. difficile Clade A first appeared about 76,000 years ago, the number of different strains of this started to increase at the end of the 16th century, before the founding of modern hospitals. This group has since thrived in hospital settings with many strains that keep adapting and evolving. “Our study provides genome and laboratory based evidence that human lifestyles can drive bacteria to form new species so they can spread more effectively. We show that strains of C. difficile bacteria have continued to evolve in response to modern diets and healthcare systems and reveal that focusing on diet and looking for new disinfectants could help in the fight against this bacterium.
The Wellcome Sanger Institutehttps://tinyurl.com/y2lumdmn
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€7.4 billion was raised at the Coronavirus Global Response pledging event on 4 May to kick-start an unprecedented global cooperation between scientists and regulators, industry and governments, international organisations, foundations and health care professionals to ensure the collaborative development and universal deployment of diagnostics, treatments and vaccines against coronavirus.
The pledging event was co-convened by the European Union, Canada, France, Germany, Italy, Japan, the Kingdom of Saudi Arabia, Norway, Spain and the United Kingdom. It builds on the commitment made by G20 leaders on 26 March and follows a call by the WHO on 24 April for a global collaboration for the accelerated development, production and equitable global access to new coronavirus essential health technologies.
Commenting on the success of the event, President of the European Commission, Ursula von der Leyen, said: “The world showed extraordinary unity for the common good. Governments and global health organisations joined forces against coronavirus. With such commitment, we are on track for developing, producing and deploying a vaccine for all. However, this is only the beginning. We need to sustain the effort and to stand ready to contribute more. The pledging marathon will continue. After governments, civil society and people worldwide need to join in, in a global mobilisation of hope and resolve.”
The funds raised will be channelled primarily through recognised global health organisations such as CEPI, Gavi, the Vaccines Alliance, as well as the Global Fund and Unitaid into developing and deploying as quickly as possible, for as many as possible, the diagnostics, treatments and vaccines that will help the world overcome the pandemic.
The Coronavirus Global Response Initiative is comprised of three partnerships for testing, treating and preventing underpinned by health systems strengthening. The three partnerships will work as autonomously as possible, with a transversal work stream on enhancing the capacity of health systems and knowledge and data sharing.
The European Commission will register and keep track of pledges up until end of May but will not receive any payments into its accounts. Funds go directly to the recipients. Recipients will, however, not decide alone on the use of the donation, but deploy it in concert with the partnership. The commitment is for all new vaccines, diagnostics and treatments against coronavirus to be made available globally for an affordable price, regardless of where they were developed.
The Global Vaccines Summit that Gavi, the Vaccine Alliance, will organise on 4 June will mobilise additional funding to protect the next generation with vaccines. As the world relies on Gavi’s work for making vaccination available everywhere, the success of Gavi’s replenishment will be crucial to the success of the Coronavirus Global Response.
In an Op-ed ahead of the pledging event, co-authored by Giuseppe Conte, President of the Government of the Italian Republic, Emmanuel Macron, President of the French Republic, Angela Merkel, Federal Chancellor of the Federal Republic of Germany, Charles Michel, President of the European Council, Erna Solberg, Prime Minister of the Kingdom of Norway, Justin Trudeau, Prime Minister of Canada and Ursula von der Leyen, President of the European Commission, they said: “None of us is immune to the pandemic and none of us can beat the virus alone. In fact, we will not truly be safe until all of us are safe – across every village, city, region and country in the world. In our interconnected world, the global health system is as strong as its weakest part. We will need to protect each other to protect ourselves.
“This poses a unique and truly global challenge. And it makes it imperative that we give ourselves the best chance to defeat it. This means bringing together the world’s best – and most prepared – minds to find the vaccines, treatments and therapies we need to make our world healthy again
“This is our generation’s duty and we know we can make this happen. High quality and low-cost health technologies are not a daydream. And we have seen how public-private partnerships have managed to make many life-saving vaccines available to the poorest people on earth over the last two decades.
“This is a defining moment for the global community. By rallying around science and solidarity today we will sow the seeds for greater unity tomorrow. Guided by the Sustainable Development Goals, we can redesign the power of community, society and global collaboration, to make sure that nobody is left behind.”
Coronavirus Global Response https://global-response.europa.eu
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The battle against cancer hinges on the early detection and then delivery of effective treatment. Oncimmune is working to revolutionise both the detection of cancer and its treatment by harnessing the sophisticated disease-detecting capabilities of the immune system to find cancer in its early stages. Oncimmune’s range of diagnostic tests assist clinicians to identify the presence of cancer on average four years before standard clinical diag- nosis, whilst its technology platform and sample biobanks are helping healthcare companies to develop new cancer treatments.
www.oncimmune.comBooth # 1F03-10
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A multicentre international study has demonstrated for the first time that diagnosis of obstructive coronary artery disease can be improved by using deep learning analysis of upright and supine single photon emission computed tomography (SPECT) myocardial perfusion imaging (MPI). According to the Centers for Disease Control and Prevention, coronary artery disease is the most common type of heart disease, killing more than 370,000 people in the United States annually. SPECT MPI, which is widely used for its diagnosis, shows how well the heart muscle is pumping and examines blood flow through the heart during exercise and at rest. On new cameras with a patient imaged in sitting position, two positions (semi-upright and supine) are routinely used to mitigate attenuation artifacts. The current quantitative standard for analysing MPI data is to calculate the combined total perfusion deficit (TPD) from these 2 positions. Visually, physicians need to reconcile information available from 2 views. Deep convolutional neural networks, often referred to as deep learning (DL), go beyond machine learning using algorithms. They directly analyse visual data, learn from them, and make intelligent findings based on the image information. For this study, DL analysis of data from the two-position stress MPI was compared with the standard TPD analysis of 1,160 patients without known coronary artery disease. Patients underwent stress MPI with the nuclear medicine radiotracer technetium (99mTc) sestamibi. New-generation solid-state SPECT scanners in four different centres were used, and images were quantified at the Cedars-Sinai Medical Centre in Los Angeles, California. All patients had on-site clinical reads and invasive coronary angiography correlations within six months of MPI. Obstructive disease was defined as at least 70 percent narrowing of the three major coronary arteries and at least 50 percent for the left main coronary artery. During the validation procedure, four different DL models were trained (each using data from three centers) and then were evaluated on the one center left aside. Predictions for 4 centers were merged to have an overall estimation of the multicenter performance. The study revealed that 718 (62 percent) patients and 1,272 of 3,480 (37 percent) arteries had obstructive disease. Per-patient sensitivity improved from 61.8 percent with TPD to 65.6 percent with DL, and per-vessel sensitivity improved from 54.6 percent with TPD to 59.1 percent with DL. In addition, DL had a sensitivity of 84.8 percent, versus 82.6 percent for an on-site clinical read. The results clearly show that DL improves MPI interpretation over current methods. “These findings were demonstrated for the first time in a rigorous, repeated external validation,” points out Piotr J. Slomka, PhD, at Cedars-Sinai Medical Center, affirming that “the latest developments in artificial intelligence can be efficiently leveraged to enhance the accuracy of existing nuclear medicine techniques.” Society of Nuclear Medicine and Molecular Imaginghttps://tinyurl.com/y5q537lm
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Reversibly paralysing and heavily sedating hospitalized patients with severe breathing problems do not improve outcomes in most cases, according to a National Institutes of Health-funded clinical trial conducted at dozens of North American hospitals and led by clinician-scientists at the University of Pittsburgh and University of Colorado schools of medicine.
The trial—which was stopped early due to futility—settles a long-standing debate in the critical care medicine community about whether it is better to paralyse and sedate patients in acute respiratory distress to aid mechanical ventilation or avoid heavy sedation to improve recovery.
“It’s been a conundrum—on the one hand, really well-done studies have shown that temporarily paralysing the patient to improve mechanical breathing saves lives. But you can’t paralyse without heavy sedation, and studies also show heavy sedation results in worse recovery. You can’t have both—so what’s a clinician to do?” said senior author Derek Angus, M.D., M.P.H., who holds the Mitchell P. Fink Endowed Chair of the Pitt School of Medicine’s Department of Critical Care Medicine. “Our trial finally settles it—light sedation with intermittent, short-term paralysis if necessary is as good as deep sedation with continuous paralysis.”
The Re-evaluation Of Systemic Early neuromuscular blockade (ROSE) trial is the first of the new National Heart, Lung, and Blood Institute’s (NHLBI) Prevention & Early Treatment of Acute Lung Injury (PETAL) Network. PETAL develops and conducts randomized controlled clinical trials to prevent or treat patients who have, or who are at risk for, acute lung injury or acute respiratory distress syndrome. The trial network places particular emphasis on early detection by requiring every network member institute include both critical care and emergency medicine, acute care or trauma principal investigators to ensure that critical health issues are recognized and triaged as fast as possible to improve patients’ odds of recovery before they are even transferred to the intensive care unit.
Angus, who also directs Pitt’s Clinical Research, Investigation, and Systems Modeling of Acute Illness (CRISMA) Center, said the trial results make him confident when he says that avoiding paralysis and deep sedation is the best practice for most patients hospitalized with breathing problems. However, he notes that future trials will be needed to tease out whether there is a subpopulation of patients with acute respiratory distress syndrome who still benefit from neuromuscular blockade.
UPMChttps://tinyurl.com/yxc95rrl
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Without timely intervention, privacy curtains in hospitals can become breeding grounds for resistant bacteria, posing a threat to patient safety, according to new research published.
The longitudinal, prospective, pilot study tracked the contamination rate of ten freshly laundered privacy curtains in the Regional Burns/Plastics Unit of the Health Services Center in Winnipeg, Canada. While the curtains had minimal contamination when they were first hung, the curtains that were hung in patient rooms became increasingly contaminated over time — and by day 14, 87.5 percent of the curtains tested positive for methicillin-resistant Staphylococcus aureus (MRSA), a pathogen associated with significant morbidity and mortality. In contrast, control curtains that were not placed in patient rooms stayed clean the entire 21 days.
None of the rooms where the curtains were placed were occupied by patients with MRSA. Four curtains were placed in a four-bed room; four were placed in two double rooms; and two controls were placed in areas without direct patient or caregiver contact. Researchers took samples from areas where people hold curtains, suggesting that the increasing contamination resulted from direct contact.
"We know that privacy curtains pose a high risk for cross-contamination because they are frequently touched but infrequently changed," said Kevin Shek, BSc, the study’s lead author in the article. "The high rate of contamination that we saw by the fourteenth day may represent an opportune time to intervene, either by cleaning or replacing the curtains."
By day 21, almost all curtains exceeded 2.5 CFU/cm, the requirement for food processing equipment cleanliness in some locations, such as the United Kingdom.
"Keeping the patient’s environment clean is a critical component in preventing healthcare-associated infections," said 2018 APIC President Janet Haas, PhD, RN, CIC, FSHEA, FAPIC. "Because privacy curtains could be a mode of disease transmission, maintaining a schedule of regular cleaning offers another potential way to protect patients from harm while they are in our care."
ScienceDaily
https://tinyurl.com/y3kbgpxu
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Bacteria that develop resistance to antibiotic drugs – superbugs – pose a major global health threat to humanity. In a concerted effort to stave off this threat, several global programmes have been established and numerous new research initiatives are being carried out. Whether they are successful is yet to be seen. International Hospital reports.
Antimicrobial or antibiotic resistance is a major emerging global health threat which continues to escalate around the world. In the EU it is responsible for around 33,000 deaths each year according to the European Commission [1] and is estimated to cost the EU EUR 1.5 billion per year in healthcare costs and productivity losses.
In the United States, the Centers for Disease Control and Prevention (CDC) estimates that more than 2.8 million antibiotic-resistant infections occur in the country each year, and more than 35,000 people die as a result [2].
In the CDC’s 2019 Antimicrobial Resistance Threats Report, Robert R. Redfield, M.D., Director of the CDC, emphasises that we should stop referring to a coming post-antibiotic era. “It’s already here,” he says. “You and I are living in a time when some miracle drugs no longer perform miracles and families are being ripped apart by a microscopic enemy. The time for action is now and we can be part of the solution.”
So, what exactly is antimicrobial resistance (AMR)? Simply put, antimicrobial resistance occurs when microorganisms – such as bacteria, viruses, fungi, protozoa and helminths (worm-like parasites) – mutate or develop a resistance gene when they are exposed to antimicrobial drugs, such as antibiotics, antifungals, antivirals, antimalarials, and antihelminthics. As a result, the drugs become ineffective and infections persist in the body, increasing the risk of morbidity and mortality as well as the spread of the disease to others.
The issue is of such global importance that a political declaration was endorsed by Heads of State at the United Nations General Assembly in New York in September 2016 signalling the world’s commitment to taking a broad, coordinated approach to address the root causes of antimicrobial resistance across multiple sectors, especially human health, animal health and agriculture.
In 2015, the World Health Organization (WHO) established the Global Antimicrobial Resistance and Use Surveillance System (GLASS) [3]. The system calls on countries to monitor and report on antibiotic resistance. The WHO noted in a report published June 1 this year, that in the past three years, participation has grown exponentially. GLASS now aggregates data from more than 64,000 surveillance sites with more than 2 million patients enrolled from 66 countries across the world. In 2018 the number of surveillance sites was 729 across 22 countries.
Hanan Balkhy, Assistant Director-General for antimicrobial resistance at WHO, explained: “The enormous expansion of countries, facilities and patients covered by the new AMR surveillance system allows us to better document the emerging public health threat of AMR.”
On the back of this data, the Organization notes that high rates of resistance among antimicrobials frequently used to treat common infections, such as urinary tract infections or some forms of diarrhoea, indicate that the world is running out of effective ways to tackle these diseases. For instance, the rate of resistance to ciprofloxacin, an antimicrobial frequently used to treat urinary tract infections, varied from 8.4% to 92.9% in 33 reporting countries.
In addition, the WHO expressed concern that the trend will further be fuelled by the inappropriate use of antibiotics during the COVID-19 pandemic. The Organization points out that evidence shows that only a small proportion of COVID-19 patients need antibiotics to treat subsequent bacterial infections and, as such, has issued guidance [4] not to provide antibiotic therapy or prophylaxis to patients with mild COVID-19 or to patients with suspected or confirmed moderate COVID-19 illness unless there is a clinical indication to do so. Solutions
What can be done to counter AMR? Although antimicrobial resistance occurs naturally over time, usually through genetic changes, there are a number of countermeasures. Primarily, healthcare practitioners should reduce the misuse and overuse of antimicrobials which are accelerating AMR. The WHO notes, for example, that in many places, antibiotics are overused and misused in people and animals, and often given without professional oversight. Examples of misuse include when they are taken by people with viral infections like colds and flu, and when they are given as growth promoters in animals or used to prevent diseases in healthy animals.
CDC’s 2019 Antimicrobial Resistant Threats Report
The CDC’s 2019 AR Threats Report lists 18 antibiotic-resistant bacteria and fungi in three categories based on the level of concern to human health – urgent, serious, and concerning. The ‘urgent’ list includes the following five threats: Carbapenem-resistant Acinetobacter Carbapenem-resistant Acinetobacter cause pneumonia and wound, bloodstream, and urinary tract infections. Nearly all these infections happen in patients who recently received care in a healthcare facility. They are estimated to have caused 700 deaths in the US in 2017. Candida auris C. auris is an emerging multidrug-resistant yeast. It can cause severe infections and spreads easily between hospitalized patients and nursing home residents. Clostridioides difficile C. difficile causes life-threatening diarrhoea and colitis (an inflammation of the colon), mostly in people who have had both recent medical care and antibiotics. Estimated death per year in the US: 12,800. Carbapenem-resistant Enterobacteriaceae (CRE) CRE are a major concern for patients in healthcare facilities. Some Enterobacteriaceae are resistant to nearly all antibiotics, leaving more toxic or less effective treatment options. Estimated deaths in the US in 2017: 1,100. Drug-resistant Neisseria gonorrhoeae N. gonorrhoeae causes the sexually transmitted disease gonorrhoeae that can result in life-threatening ectopic pregnancy and infertility, and can increase the risk of getting and giving HIV.
See the report for the complete list. https://www.cdc.gov/drugresistance/pdf/threats-report/2019-ar-threats-report-508.pdf
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